PoplarV1, Main, Exploration, bibRecord, 003974

Characterization of nonderivatized plant cell walls using high-resolution solution-state NMR spectroscopy.

Identifieur interne : 003974 ( Main/Exploration ); précédent : 003973; suivant : 003975

Characterization of nonderivatized plant cell walls using high-resolution solution-state NMR spectroscopy.

Auteurs : Daniel J. Yelle [États-Unis] ; John Ralph ; Charles R. Frihart

Source :

Magnetic resonance in chemistry : MRC [ 1097-458X ] ; 2008.

RBID : pubmed:18383438

Descripteurs français

KwdFr :
- Extraits de plantes (analyse), Extraits de plantes (composition chimique), Fractionnement cellulaire (méthodes), Manipulation d'échantillons (méthodes), Membrane cellulaire (composition chimique), Résonance magnétique nucléaire biomoléculaire (méthodes), Sensibilité et spécificité (MeSH), Solvants (composition chimique).
MESH :
- analyse : Extraits de plantes.
- composition chimique : Extraits de plantes, Membrane cellulaire, Solvants.
- méthodes : Fractionnement cellulaire, Manipulation d'échantillons, Résonance magnétique nucléaire biomoléculaire.
- Sensibilité et spécificité.

English descriptors

KwdEn :
- Cell Fractionation (methods), Cell Membrane (chemistry), Nuclear Magnetic Resonance, Biomolecular (methods), Plant Extracts (analysis), Plant Extracts (chemistry), Sensitivity and Specificity (MeSH), Solvents (chemistry), Specimen Handling (methods).
MESH :
- chemical , analysis : Plant Extracts.
- chemistry : Cell Membrane, Plant Extracts, Solvents.
- methods : Cell Fractionation, Nuclear Magnetic Resonance, Biomolecular, Specimen Handling.
- Sensitivity and Specificity.

Abstract

A recently described plant cell wall dissolution system has been modified to use perdeuterated solvents to allow direct in-NMR-tube dissolution and high-resolution solution-state NMR of the whole cell wall without derivatization. Finely ground cell wall material dissolves in a solvent system containing dimethylsulfoxide-d(6) and 1-methylimidazole-d(6) in a ratio of 4:1 (v/v), keeping wood component structures mainly intact in their near-native state. Two-dimensional NMR experiments, using gradient-HSQC (heteronuclear single quantum coherence) 1-bond (13)C--(1)H correlation spectroscopy, on nonderivatized cell wall material from a representative gymnosperm pinus taeda (loblolly pine), an angiosperm Populus tremuloides (quaking aspen), and a herbaceous plant Hibiscus cannabinus (kenaf) demonstrate the efficacy of the system. We describe a method to synthesize 1-methylimidazole-d(6) with a high degree of perdeuteration, thus allowing cell wall dissolution and NMR characterization of nonderivatized plant cell wall structures.

DOI: 10.1002/mrc.2201
PubMed: 18383438
PubMed Central: PMC5826555

Affiliations:

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Le document en format XML

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<term>Extraits de plantes (composition chimique)</term>
<term>Fractionnement cellulaire (méthodes)</term>
<term>Manipulation d'échantillons (méthodes)</term>
<term>Membrane cellulaire (composition chimique)</term>
<term>Résonance magnétique nucléaire biomoléculaire (méthodes)</term>
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<front><div type="abstract" xml:lang="en">A recently described plant cell wall dissolution system has been modified to use perdeuterated solvents to allow direct in-NMR-tube dissolution and high-resolution solution-state NMR of the whole cell wall without derivatization. Finely ground cell wall material dissolves in a solvent system containing dimethylsulfoxide-d(6) and 1-methylimidazole-d(6) in a ratio of 4:1 (v/v), keeping wood component structures mainly intact in their near-native state. Two-dimensional NMR experiments, using gradient-HSQC (heteronuclear single quantum coherence) 1-bond (13)C--(1)H correlation spectroscopy, on nonderivatized cell wall material from a representative gymnosperm pinus taeda (loblolly pine), an angiosperm Populus tremuloides (quaking aspen), and a herbaceous plant Hibiscus cannabinus (kenaf) demonstrate the efficacy of the system. We describe a method to synthesize 1-methylimidazole-d(6) with a high degree of perdeuteration, thus allowing cell wall dissolution and NMR characterization of nonderivatized plant cell wall structures.</div>
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<ReferenceList><Reference><Citation>Carbohydr Res. 2000 Dec 1;329(4):807-15</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11125823</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Am Chem Soc. 2002 May 8;124(18):4974-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11982358</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Agric Food Chem. 2007 Jul 11;55(14):5461-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17552541</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Rapid Commun Mass Spectrom. 2004;18(11):1181-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15164346</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biomacromolecules. 2007 Dec;8(12):3740-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17979237</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Carbohydr Res. 2004 Jan 22;339(2):301-12</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14698888</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biomacromolecules. 2004 Mar-Apr;5(2):266-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15002983</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Carbohydr Res. 2000 Nov 17;329(3):635-45</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11128591</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Agric Food Chem. 1998 Feb 16;46(2):547-552</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10554275</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Carbohydr Res. 2002 Jun 5;337(11):1033-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12039544</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Solid State Nucl Magn Reson. 1997 Mar;8(1):25-32</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9178421</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant J. 2003 Aug;35(4):535-44</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12904215</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4939-44</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12668766</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
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Characterization of nonderivatized plant cell walls using high-resolution solution-state NMR spectroscopy.

Characterization of nonderivatized plant cell walls using high-resolution solution-state NMR spectroscopy.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki